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HCA Ingest Documentation
HCA Ingest Documentation
User documentation
Submit data flow
Spreadsheet quick guide
Submission State Diagram
Update via spreadsheet
Upload a new submission
Operations tasks
Operations Zenhub Board Pipeline and Process
Add an entry to our secrets stored on AWS
Create wrangler user in the wrangling EC2 instance
Delete project
How to force set a submission state
How to update GCP credentials of Ingest Exporter to access Terra staging area
Ingest release process
Investigate Stuck Submissions
Stuck in Exporting
Stuck in Submitted
Stuck in Validation
Manual Steps for Unpublishing schemas
Regular Tasks Checklist
Release Manager Runbook
Releasing HCA Ontology Service
Wrangler UI access
Admin and Setup
Adding Quay base image
Git secrets setup
Ingest CI/CD
Offboarding
Onboarding
Sprint planning
Terra staging area access
Upload service
ingest API
API Tokens
ingest UI
ingest API browser
User documentation
Submit data flow
Submit data flow
Start
User creates a Project via UI
User updates Project via UI
User uploads a metadata spreadsheet
User uploads the data files
Data is submitted to DCP
get accessions?
Data is submitted to the EBI public archives
submit to HCA Data Portal?
publish to HCA project catalogue?
Project is published to HCA Project Catalogue